PhD on Computational modeling of biofilm treatment with microbubbles

Job description

We are looking for a PhD student (4 years) with ultrasound contrast agent (microbubbles of 1-10 micrometer in size) of biofilm experience to develop computational modeling of the targeted microbubble-biofilm interaction for treating bacterial biofilm infections on cardiac devices. Cardiac device infections, such as on pacemakers, prosthetic valves, and left ventricular assist devices, have high mortality rates. Accurate diagnosis and treatment of these infections at an early stage is critical because a delay in diagnosis is associated with increased mortality. A targeted non-invasive treatment is also desperately needed, but currently unavailable. Targeted microbubbles can specifically bind to the bacterial biofilms, making ultrasound molecular imaging and targeted therapy possible.

You will be responsible for computational modeling the interaction between ultrasound-activated microbubbles and the biofilm to maximize therapeutic outcome. Experimental validation of the computational modeling can be part of the project. For this, you will closely collaborate with researchers investigating ultrasound molecular imaging and therapy, and in consultation with experts from the Dept. of Cardiology and Medical Microbiology and Infectious Diseases.

The BUBBLE CURE project will result in a novel multidisciplinary technology that allows for accurate diagnosis and treatment of cardiac device-related bacterial biofilm infections. The project is part of a new research line in translational biomedical research, made possible by a personal grant from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 805308) to the Principal Investigator Dr. K. Kooiman. By combining targeted microbubbles and ultrasound we aim to develop advanced ultrasound diagnostic and therapeutic technologies for cardiac-device related bacterial biofilm infections. The work will be carried out in close collaboration with PhD students and postdocs within the therapeutic ultrasound contrast agent group embedded in the Biomedical Engineering group, part of the Department of Cardiology, and with existing national and international collaborators.


Work environment

A healthy population and excellence in healthcare through research and education. This is what Erasmus MC stands for. Conducting groundbreaking work, pushing boundaries and leading the way. In research, education, and healthcare. We are practical people with a high level of expertise, working hard to improve and renew the healthcare of today and the public health of tomorrow.

Thoraxcenter Biomedical Engineering ( is a group of 70 researchers performing highly innovative research in cardiovascular diagnosis and therapy. We focus on translational research in imaging with ultrasound and light, ultrasound contrast agents for molecular imaging and drug delivery, and vascular biomechanics.

Qualifications and skills

Expert knowledge in the computational modeling of ultrasound-activated microbubbles or biofilms. Experience with experimental validation of computational modeling is highly appreciated. Candidates are expected to have an MSc in a relevant field, such as applied physics, biomedical engineering, microbiology or related, and preferably have experience in interdisciplinary projects. You have a can-do attitude, experience with programming (Matlab or similar), a creative and pro-active attitude with good analytical skills, the ability to combine creativity with a sound academic attitude, excellent communication skills in English, both in writing and speaking, and are a good team player. The research project should result in a PhD thesis.

Being able to present a certificate of good conduct, a valid proof of identity, and diplomas are conditions for the appointment.

Terms of employment

You will receive a temporary position for 4 years. The gross monthly salary is € 2.422,- in the 1st year and increases to € 3.103,-  in the 4th year (scale OIO). The terms of employment are according to the Collective Bargaining Agreement for Dutch University Medical Centers (CAO UMC).


For more information about this position, please contact Dr. Klazina Kooiman, Assistant Professor and Principal investigator of the BUBBLE CURE project, phone number: +31(0)10 704 4036 or e-mail: For queries regarding your application, please contact Jerry Chandansingh, Recruiter, by phone number: +31 (0)6 500 310 06.

If you are excited by the thought of this position and would like to apply, please do so by using the application form on the website:

Please also send a motivation letter and list of BSc and MSc courses with grades.

PhD on Computational modeling of biofilm treatment with microbubbles

PhD on Computational modeling of biofilm treatment with microbubbles

Cookie melding

Deze website maakt gebruik van cookies. Cookies zijn tekstbestanden die op de computer worden geplaatst wanneer websites worden bezocht. Ze worden veel gebruikt om websites efficiënt te laten werken en om informatie te verstrekken aan de eigenaren van de website. Hieronder kan aangegeven worden of u de cookies accepteert.